If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ), 'gf_id' => 'HOM05D000860', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000860' ), 'data_identifier' => 'HOM05D000860', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000860', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16120' => 'bna', 'A03p00130' => 'bna', 'A03p56870' => 'bna', 'A04p06160' => 'bna', 'A07p04720' => 'bna', 'A07p12170' => 'bna', 'A09p46410' => 'bna', 'Aa31LG10G8580' => 'aar', 'Aa31LG1G21890' => 'aar', 'Aa31LG1G23330' => 'aar', 'Aa31LG5G12200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3756' => 'aag', 'Actinidia03733' => 'ach', 'Actinidia11546' => 'ach', 'Actinidia12480' => 'ach', 'Actinidia16200' => 'ach', 'Actinidia20451' => 'ach', 'Actinidia20772' => 'ach', 'Actinidia27025' => 'ach', 'Actinidia29066' => 'ach', 'Actinidia32603' => 'ach', 'Ah.03g133610' => 'amhyb', 'Ah.03g144390' => 'amhyb', 'Ah.04g158030' => 'amhyb', 'Ah.05g172640' => 'amhyb', 'Ah.06g183810' => 'amhyb', 'Ah.08g210010' => 'amhyb', 'Ah.08g215370' => 'amhyb', 'Ah.15g090430' => 'amhyb', 'Ah.15g092300' => 'amhyb', 'AL1G40460' => 'aly', 'AL3G51450' => 'aly', 'AL5G34320' => 'aly', 'AL6G10340' => 'aly', 'AL6G12470' => 'aly', 'AL7G26100' => 'aly', 'AL7G28380' => 'aly', 'AL8G39340' => 'aly', 'Aqoxy1G01248' => 'aox', 'Aqoxy1G01269' => 'aox', 'Aqoxy1G03983' => 'aox', 'Aqoxy2G00764' => 'aox', 'Aqoxy2G01929' => 'aox', 'Aqoxy4G01788' => 'aox', 'Aqoxy5G03618' => 'aox', 'Aqoxy6G01123' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68WIDH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.704HAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7R2GAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AHVV25' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ1PKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0YJW' => 'arhy', 'AT1G24480' => 'ath', 'AT2G16030' => 'ath', 'AT3G53400' => 'ath', 'AT4G24805' => 'ath', 'AT4G26730' => 'ath', 'AT5G01710' => 'ath', 'AT5G03190' => 'ath', 'ATR0115G014' => 'atr', 'ATR0594G219' => 'atr', 'ATR0804G076' => 'atr', 'ATR0824G156' => 'atr', 'Atru.chr10.1763' => 'acertr', 'Atru.chr11.2200' => 'acertr', 'Atru.chr6.3106' => 'acertr', 'Atru.chr8.1875' => 'acertr', 'Atru.chr8.2348' => 'acertr', 'Atru.chr9.990' => 'acertr', 'AUR62000872' => 'cqu', 'AUR62001262' => 'cqu', 'AUR62005104' => 'cqu', 'AUR62005537' => 'cqu', 'AUR62006288' => 'cqu', 'AUR62026337' => 'cqu', 'AUR62040362' => 'cqu', 'AUR62042284' => 'cqu', 'BcaB01g06116' => 'bca', 'BcaB01g06247' => 'bca', 'BcaB01g06248' => 'bca', 'BcaB01g06249' => 'bca', 'BcaB02g08527' => 'bca', 'BcaB05g21916' => 'bca', 'BcaC02g09167' => 'bca', 'BcaC02g09168' => 'bca', 'BcaC03g13085' => 'bca', 'BcaC03g14035' => 'bca', 'BcaC06g32732' => 'bca', 'BcaNung00758' => 'bca', 'BcaNung07244' => 'bca', 'BolC1t00271H' => 'bol', 'BolC1t00273H' => 'bol', 'BolC1t01940H' => 'bol', 'BolC2t06008H' => 'bol', 'BolC3t12600H' => 'bol', 'BolC4t25490H' => 'bol', 'BolC7t42323H' => 'bol', 'BolC7t45993H' => 'bol', 'BolC8t50478H' => 'bol', 'BraA01t01548Z' => 'bra', 'BraA02t04681Z' => 'bra', 'BraA03t09403Z' => 'bra', 'BraA03t14755Z' => 'bra', 'BraA04t16319Z' => 'bra', 'BraA07t28260Z' => 'bra', 'BraA07t29001Z' => 'bra', 'BraA09t40106Z' => 'bra', 'C01p02820' => 'bna', 'C01p02850' => 'bna', 'C01p20110' => 'bna', 'C02p00110' => 'bna', 'C03p00280' => 'bna', 'C04p39180' => 'bna', 'C07p18130' => 'bna', 'C07p55200' => 'bna', 'C08p28750' => 'bna', 'CAN.G1034.32' => 'can', 'CAN.G1061.28' => 'can', 'CAN.G236.19' => 'can', 'CAN.G472.46' => 'can', 'CAN.G49.13' => 'can', 'CAN.G631.19' => 'can', 'CANSAT01G2929' => 'cansat', 'CANSAT35G2042' => 'cansat', 'CANSAT54G1117' => 'cansat', 'CANSAT54G1862' => 'cansat', 'CANSAT64G2191' => 'cansat', 'CANSAT80G0362' => 'cansat', 'CANSAT80G1090' => 'cansat', 'CARHR026650' => 'chi', 'CARHR084200' => 'chi', 'CARHR084220' => 'chi', 'CARHR163310' => 'chi', 'CARHR210160' => 'chi', 'CARHR212070' => 'chi', 'CARHR232210' => 'chi', 'CARHR234350' => 'chi', 'Carub.0001s2563' => 'cru', 'Carub.0005s1996' => 'cru', 'Carub.0006s0013' => 'cru', 'Carub.0007s1411' => 'cru', 'Carub.0007s1625' => 'cru', 'Ca_07705_v3' => 'car', 'Ca_08841_v3' => 'car', 'Ca_11464_v3' => 'car', 'Ca_15014_v3' => 'car', 'Ca_17804_v3' => 'car', 'Ca_20364_v3' => 'car', 'Cc00_g05830' => 'ccan', 'Cc00_g13870' => 'ccan', 'Cc01_g11220' => 'ccan', 'Cc05_g00370' => 'ccan', 'Cc05_g05560' => 'ccan', 'Cc08_g08050' => 'ccan', 'Cc11_g16240' => 'ccan', 'CDE02G4720' => 'cde', 'CDE06G0504' => 'cde', 'CDE09G0054' => 'cde', 'Cfa009270' => 'cfa', 'Cfa011786' => 'cfa', 'Cfa014481' => 'cfa', 'Cfa017106' => 'cfa', 'Cfa017540' => 'cfa', 'Ciclev10011494m.g' => 'ccl', 'Ciclev10011672m.g' => 'ccl', 'Ciclev10016548m.g' => 'ccl', 'Ciclev10024108m.g' => 'ccl', 'Ciclev10033974m.g' => 'ccl', 'CiPaw.04G120200' => 'cil', 'CiPaw.05G175900' => 'cil', 'CiPaw.09G177100' => 'cil', 'CiPaw.09G215900' => 'cil', 'CiPaw.10G134300' => 'cil', 'CiPaw.10G161200' => 'cil', 'ClCG02G001460' => 'cla', 'ClCG04G006630' => 'cla', 'ClCG04G008950' => 'cla', 'ClCG05G026160' => 'cla', 'ClCG10G020360' => 'cla', 'ClCG10G022520' => 'cla', 'COL.COLO4_08562' => 'col', 'COL.COLO4_11163' => 'col', 'COL.COLO4_14442' => 'col', 'COL.COLO4_23546' => 'col', 'COL.COLO4_27038' => 'col', 'COL.COLO4_32719' => 'col', 'Cpa.g.c33722' => 'cpa', 'Cpa.g.sc2.347' => 'cpa', 'Cpa.g.sc34.49' => 'cpa', 'Cpa.g.sc369.4' => 'cpa', 'Cpa.g.sc4.45' => 'cpa', 'Cpa.g.sc5.246' => 'cpa', 'CsaV3_3G033320' => 'csa', 'CsaV3_3G035740' => 'csa', 'CsaV3_4G026710' => 'csa', 'CsaV3_6G039460' => 'csa', 'CsaV3_7G003950' => 'csa', 'CSS0010257' => 'camsi', 'CSS0013654' => 'camsi', 'CSS0027524' => 'camsi', 'CSS0031857' => 'camsi', 'CSS0032860' => 'camsi', 'CSS0043489' => 'camsi', 'CSS0046750' => 'camsi', 'CSS0047530' => 'camsi', 'DCAR_007028' => 'dca', 'DCAR_009702' => 'dca', 'DCAR_018816' => 'dca', 'DCAR_020458' => 'dca', 'DCAR_022736' => 'dca', 'DCAR_024068' => 'dca', 'DCAR_028889' => 'dca', 'Dinv10889' => 'din', 'Dinv12180' => 'din', 'Dinv12817' => 'din', 'Dinv13864' => 'din', 'Dinv14762' => 'din', 'Dinv18563' => 'din', 'Dinv22242' => 'din', 'Dinv25302' => 'din', 'Dinv28700' => 'din', 'Dinv32756' => 'din', 'Dinv35418' => 'din', 'Dinv42196' => 'din', 'Duzib093G1744' => 'dzi', 'Duzib093G2042' => 'dzi', 'Duzib116G0686' => 'dzi', 'Duzib128G0216' => 'dzi', 'Duzib128G1948' => 'dzi', 'Duzib168G0283' => 'dzi', 'Duzib205G0458' => 'dzi', 'Duzib248G0557' => 'dzi', 'Duzib251G0411' => 'dzi', 'ECA233G3204' => 'eca', 'ECA233G6248' => 'eca', 'ECA234G1915' => 'eca', 'ECA247G0524' => 'eca', 'ECA248G0775' => 'eca', 'ECA248G3821' => 'eca', 'EL10Ac4g09314' => 'bvu', 'EL10Ac7g15878' => 'bvu', 'EL10Ac7g16545' => 'bvu', 'EL10Ac7g16796' => 'bvu', 'EL10As2g23203' => 'bvu', 'Eucgr.A00626' => 'egr', 'Eucgr.A01156' => 'egr', 'Eucgr.A01742' => 'egr', 'Eucgr.B00164' => 'egr', 'Eucgr.H04719' => 'egr', 'Eucgr.K02942' => 'egr', 'FAN02G1322' => 'fan', 'FAN02G3288' => 'fan', 'FAN02G4050' => 'fan', 'FAN05G0414' => 'fan', 'FAN05G2158' => 'fan', 'FAN05G3398' => 'fan', 'FAN07G2308' => 'fan', 'FAN09G1893' => 'fan', 'FAN09G3393' => 'fan', 'FAN11G3204' => 'fan', 'FAN12G0227' => 'fan', 'FAN14G0660' => 'fan', 'FAN14G4874' => 'fan', 'FAN14G5122' => 'fan', 'FAN16G1489' => 'fan', 'FAN16G3168' => 'fan', 'FAN17G1484' => 'fan', 'FAN21G0721' => 'fan', 'FAN22G1293' => 'fan', 'FAN22G1956' => 'fan', 'FAN25G0984' => 'fan', 'FvH4_3g39840' => 'fve', 'FvH4_4g25070' => 'fve', 'FvH4_6g10540' => 'fve', 'FvH4_6g15740' => 'fve', 'FvH4_6g43920' => 'fve', 'Glyma.01G127900' => 'gma', 'Glyma.01G150000' => 'gma', 'Glyma.03G045400' => 'gma', 'Glyma.03G180300' => 'gma', 'Glyma.09G214100' => 'gma', 'Glyma.09G280600' => 'gma', 'Glyma.10G051900' => 'gma', 'Glyma.11G163400' => 'gma', 'Glyma.12G103300' => 'gma', 'Glyma.13G139300' => 'gma', 'Glyma.18G056702' => 'gma', 'Glyma.18G208202' => 'gma', 'Glyma.19G181000' => 'gma', 'Glyma.U031602' => 'gma', 'Gohir.A01G215400' => 'ghi', 'Gohir.A03G029000' => 'ghi', 'Gohir.A03G131500' => 'ghi', 'Gohir.A04G095800' => 'ghi', 'Gohir.A04G137500' => 'ghi', 'Gohir.A05G243700' => 'ghi', 'Gohir.A08G203500' => 'ghi', 'Gohir.A12G187401' => 'ghi', 'Gohir.A13G011100' => 'ghi', 'Gohir.A13G025400' => 'ghi', 'Gohir.D01G204000' => 'ghi', 'Gohir.D02G155400' => 'ghi', 'Gohir.D03G139600' => 'ghi', 'Gohir.D04G135600' => 'ghi', 'Gohir.D04G180700' => 'ghi', 'Gohir.D05G244866' => 'ghi', 'Gohir.D08G220800' => 'ghi', 'Gohir.D12G190400' => 'ghi', 'Gohir.D13G011800' => 'ghi', 'Gohir.D13G024000' => 'ghi', 'Gorai.002G248500' => 'gra', 'Gorai.003G146300' => 'gra', 'Gorai.005G174300' => 'gra', 'Gorai.008G204200' => 'gra', 'Gorai.009G254500' => 'gra', 'Gorai.012G119400' => 'gra', 'Gorai.012G173900' => 'gra', 'Gorai.013G013000' => 'gra', 'Gorai.013G027100' => 'gra', 'GSVIVG01000419001' => 'vvi', 'GSVIVG01025177001' => 'vvi', 'GSVIVG01030260001' => 'vvi', 'HanXRQChr01g0007051' => 'han', 'HanXRQChr04g0110821' => 'han', 'HanXRQChr04g0114101' => 'han', 'HanXRQChr12g0361971' => 'han', 'HanXRQChr12g0372071' => 'han', 'HanXRQChr13g0403481' => 'han', 'HanXRQChr15g0463331' => 'han', 'HanXRQChr17g0569201' => 'han', 'Haze_12304' => 'cav', 'Haze_12996' => 'cav', 'Haze_20609' => 'cav', 'Haze_21093' => 'cav', 'Haze_24422' => 'cav', 'Hma1.2p1_0014F.1_g009980' => 'hma', 'Hma1.2p1_0079F.1_g041340' => 'hma', 'Hma1.2p1_0501F.1_g167300' => 'hma', 'Hma1.2p1_0712F.1_g207590' => 'hma', 'Hma1.2p1_1031F.1_g249970' => 'hma', 'Hma1.2p1_1586F.1_g292130' => 'hma', 'HPP92_000957' => 'vpl', 'HPP92_001790' => 'vpl', 'HPP92_003238' => 'vpl', 'HPP92_012708' => 'vpl', 'HPP92_025113' => 'vpl', 'Hund07049' => 'sun', 'Lalb_Chr01g0018861' => 'lal', 'Lalb_Chr01g0023431' => 'lal', 'Lalb_Chr06g0171491' => 'lal', 'Lalb_Chr07g0185581' => 'lal', 'Lalb_Chr07g0190891' => 'lal', 'Lalb_Chr19g0135621' => 'lal', 'Lalb_Chr20g0114681' => 'lal', 'Lalb_Chr25g0289151' => 'lal', 'Lj1g0015108' => 'lja', 'Lj1g0021314' => 'lja', 'Lj1g0022602' => 'lja', 'Lj1P125T29' => 'lonja', 'Lj1P190T80' => 'lonja', 'Lj2C66T8' => 'lonja', 'Lj3A945T20' => 'lonja', 'Lj3g0007411' => 'lja', 'Lj3g0009918' => 'lja', 'Lj3P1063T32' => 'lonja', 'Lj4g0017323' => 'lja', 'Lj5g0023643' => 'lja', 'Lj6g0019825' => 'lja', 'Lj8E120T0' => 'lonja', 'Lsat_1_v5_gn_1_65400' => 'lsa', 'Lsat_1_v5_gn_1_66980' => 'lsa', 'Lsat_1_v5_gn_5_149681' => 'lsa', 'Lsat_1_v5_gn_5_87940' => 'lsa', 'Lsat_1_v5_gn_6_46140' => 'lsa', 'Lsat_1_v5_gn_8_150481' => 'lsa', 'Lsat_1_v5_gn_9_14620' => 'lsa', 'Lsat_1_v5_gn_9_36341' => 'lsa', 'Lsat_1_v5_gn_9_90221' => 'lsa', 'Manes.06G113800' => 'mes', 'Manes.08G006300' => 'mes', 'Manes.09G068966' => 'mes', 'Manes.09G112500' => 'mes', 'Manes.12G018700' => 'mes', 'Manes.12G078700' => 'mes', 'MBI02_g37279_MAGBIO' => 'mbi', 'MBI10_g20798_MAGBIO' => 'mbi', 'MBI11_g15963_MAGBIO' => 'mbi', 'MBI15_g01649_MAGBIO' => 'mbi', 'MBI15_g40983_MAGBIO' => 'mbi', 'MBI15_g40984_MAGBIO' => 'mbi', 'MD00G1011300' => 'mdo', 'MD04G1099200' => 'mdo', 'MD04G1167500' => 'mdo', 'MD09G1102000' => 'mdo', 'MD09G1127700' => 'mdo', 'MD11G1059300' => 'mdo', 'MD12G1119800' => 'mdo', 'MD12G1180800' => 'mdo', 'MD13G1106800' => 'mdo', 'MD16G1106900' => 'mdo', 'Medtr1g064690' => 'mtr', 'Medtr1g099090' => 'mtr', 'Medtr3g031200' => 'mtr', 'Medtr4g013290' => 'mtr', 'Medtr4g046723' => 'mtr', 'Medtr4g063440' => 'mtr', 'Medtr7g070530' => 'mtr', 'Medtr7g101130' => 'mtr', 'Medtr8g089585' => 'mtr', 'Medtr8g100030' => 'mtr', 'MELO3C000084.2' => 'cme', 'MELO3C000317.2' => 'cme', 'MELO3C004860.2' => 'cme', 'MELO3C008658.2' => 'cme', 'MELO3C009125.2' => 'cme', 'MELO3C009334.2' => 'cme', 'MELO3C011910.2' => 'cme', 'MELO3C014247.2' => 'cme', 'MELO3C019005.2' => 'cme', 'MELO3C025410.2' => 'cme', 'MELO3C026031.2' => 'cme', 'MELO3C027253.2' => 'cme', 'MELO3C027700.2' => 'cme', 'MELO3C027870.2' => 'cme', 'MELO3C027993.2' => 'cme', 'MELO3C029864.2' => 'cme', 'MELO3C029958.2' => 'cme', 'MELO3C029959.2' => 'cme', 'MELO3C030536.2' => 'cme', 'MELO3C032914.2' => 'cme', 'MELO3C032915.2' => 'cme', 'Migut.D00843' => 'egut', 'Migut.D02216' => 'egut', 'Migut.F00394' => 'egut', 'Migut.H01212' => 'egut', 'Migut.J00090' => 'egut', 'Migut.K00650' => 'egut', 'Migut.O00225' => 'egut', 'Migut.O00631' => 'egut', 'MSTRG.12291' => 'ama', 'MSTRG.18972' => 'ama', 'MSTRG.23189' => 'ama', 'MSTRG.545' => 'ama', 'MSTRG.5537' => 'ama', 'MSTRG.8777' => 'ama', 'Nitab4.5_0000036g0430' => 'nta', 'Nitab4.5_0000041g0180' => 'nta', 'Nitab4.5_0000047g0160' => 'nta', 'Nitab4.5_0000291g0080' => 'nta', 'Nitab4.5_0000650g0160' => 'nta', 'Nitab4.5_0001226g0060' => 'nta', 'Nitab4.5_0001360g0070' => 'nta', 'Nitab4.5_0002531g0070' => 'nta', 'Nitab4.5_0003701g0030' => 'nta', 'Nitab4.5_0004880g0040' => 'nta', 'Nitab4.5_0007393g0010' => 'nta', 'Nitab4.5_0007512g0030' => 'nta', 'Nn1g00538' => 'nnu', 'Nn1g03114' => 'nnu', 'Nn1g03119' => 'nnu', 'Nn2g10774' => 'nnu', 'Nn2g14109' => 'nnu', 'Nn4g22499' => 'nnu', 'Nn4g25648' => 'nnu', 'Nn7g37700' => 'nnu', 'Oeu001264.1' => 'oeu', 'Oeu009372.1' => 'oeu', 'Oeu011585.1' => 'oeu', 'Oeu011586.1' => 'oeu', 'Oeu026971.2' => 'oeu', 'Oeu040640.1' => 'oeu', 'Oeu057641.1' => 'oeu', 'Os01g0785600' => 'osa', 'Os05g0500700' => 'osa', 'Os07g0692401' => 'osa', 'Os08g0119500' => 'osa', 'Peaxi162Scf00128g00066' => 'pax', 'Peaxi162Scf00193g00122' => 'pax', 'Peaxi162Scf00270g00092' => 'pax', 'Peaxi162Scf00703g00019' => 'pax', 'Peaxi162Scf00744g00024' => 'pax', 'Peaxi162Scf00943g00045' => 'pax', 'PGR004G0739' => 'pgr', 'PGR031G3676' => 'pgr', 'PGR042G0516' => 'pgr', 'PGR083G2504' => 'pgr', 'PGR119G1025' => 'pgr', 'PGSC0003DMG400008059' => 'stu', 'PGSC0003DMG400010404' => 'stu', 'PGSC0003DMG400010735' => 'stu', 'PGSC0003DMG400011624' => 'stu', 'PGSC0003DMG400015164' => 'stu', 'PGSC0003DMG400020561' => 'stu', 'PGSC0003DMG400030659' => 'stu', 'Phvul.001G176600' => 'pvu', 'Phvul.002G128200' => 'pvu', 'Phvul.002G253500' => 'pvu', 'Phvul.006G074500' => 'pvu', 'Phvul.007G221200' => 'pvu', 'Phvul.008G091100' => 'pvu', 'Phvul.010G062900' => 'pvu', 'Phvul.011G108000' => 'pvu', 'Potri.006G105100' => 'ptr', 'Potri.006G128800' => 'ptr', 'Potri.010G052100' => 'ptr', 'Potri.013G152100' => 'ptr', 'Potri.013G153300' => 'ptr', 'Potri.015G088400' => 'ptr', 'Potri.016G088900' => 'ptr', 'Potri.016G128100' => 'ptr', 'Potri.019G125300' => 'ptr', 'Pp3c3_8400' => 'ppa', 'Prupe.1G239500' => 'ppe', 'Prupe.3G223700' => 'ppe', 'Prupe.6G047200' => 'ppe', 'Prupe.6G237600' => 'ppe', 'Prupe.6G285700' => 'ppe', 'Psat3g010560' => 'psa', 'Psat3g043560' => 'psa', 'Psat3g054920' => 'psa', 'Psat3g054960' => 'psa', 'Psat3g123000' => 'psa', 'Psat5g152600' => 'psa', 'Psat6g067960' => 'psa', 'Psat6g084760' => 'psa', 'Psat7g004640' => 'psa', 'Psat7g059800' => 'psa', 'Psat7g163240' => 'psa', 'Psat7g249520' => 'psa', 'PSO017G4595' => 'pso', 'PSO017G7135' => 'pso', 'PSO063G2151' => 'pso', 'PSO063G3039' => 'pso', 'PSO170G2988' => 'pso', 'PSO339G4857' => 'pso', 'PSO339G5579' => 'pso', 'PSO384G2948' => 'pso', 'PSO455G0053' => 'pso', 'PSO541G0433' => 'pso', 'PSO675G9271' => 'pso', 'QL01p000412' => 'qlo', 'QL01p025920' => 'qlo', 'QL03p055953' => 'qlo', 'QL07p033824' => 'qlo', 'QL07p044635' => 'qlo', 'QL09p001288' => 'qlo', 'RcHm_v2.0_Chr1g0337551' => 'rch', 'RcHm_v2.0_Chr2g0160701' => 'rch', 'RcHm_v2.0_Chr3g0461501' => 'rch', 'RcHm_v2.0_Chr3g0469451' => 'rch', 'RcHm_v2.0_Chr4g0432251' => 'rch', 'RcHm_v2.0_Chr5g0071801' => 'rch', 'RcHm_v2.0_Chr7g0226531' => 'rch', 'Rhsim01G0217500' => 'rsi', 'Rhsim05G0226400' => 'rsi', 'Rhsim06G0154700' => 'rsi', 'Rhsim08G0183300' => 'rsi', 'Rhsim13G0063300' => 'rsi', 'Sabra06G0081800' => 'sbr', 'Sabra06G0101400' => 'sbr', 'Sabra10G0018200' => 'sbr', 'Sabra13G0122200' => 'sbr', 'Sabra16G0094600' => 'sbr', 'Sabra16G0130300' => 'sbr', 'Sabra19G0123500' => 'sbr', 'Sabra19G0131100' => 'sbr', 'SalBow2G2233' => 'sbo', 'SalBow3G0016' => 'sbo', 'SalBow3G3227' => 'sbo', 'SalBow4G2039' => 'sbo', 'SalBow5G2145' => 'sbo', 'SalBow8G2571' => 'sbo', 'Sc12g0002490' => 'sci', 'Sc14g0008870' => 'sci', 'Sc20g0005200' => 'sci', 'Sc20g0006730' => 'sci', 'Sc21g0005000' => 'sci', 'Sed0003367' => 'sed', 'Sed0008091' => 'sed', 'Sed0016311' => 'sed', 'Sed0021746' => 'sed', 'Sed0022692' => 'sed', 'Sed0023108' => 'sed', 'SEGI_03569' => 'sgi', 'SEGI_17580' => 'sgi', 'SEGI_25633' => 'sgi', 'SEGI_26488' => 'sgi', 'SEGI_27848' => 'sgi', 'SEGI_30032' => 'sgi', 'SEGI_31539' => 'sgi', 'SGA_v2.0_scaffold159G37586' => 'sas', 'SGA_v2.0_scaffold221G42739' => 'sas', 'SGA_v2.0_scaffold234G43642' => 'sas', 'SGA_v2.0_scaffold25G10793' => 'sas', 'SGA_v2.0_scaffold39G15329' => 'sas', 'SGA_v2.0_scaffold49G18328' => 'sas', 'SGA_v2.0_scaffold5G02801' => 'sas', 'SGA_v2.0_scaffold659G53393' => 'sas', 'SGA_v2.0_scaffold75G25037' => 'sas', 'SGA_v2.0_scaffold85G26676' => 'sas', 'SGA_v2.0_scaffold97G29220' => 'sas', 'SHI10287' => 'shi', 'SHI12885' => 'shi', 'SHI17872' => 'shi', 'SMO347G0062' => 'smo', 'Solyc02g063460.1' => 'sly', 'Solyc02g091600.1' => 'sly', 'Solyc03g111620.1' => 'sly', 'Solyc05g014120.1' => 'sly', 'Solyc06g007380.1' => 'sly', 'Solyc09g015040.1' => 'sly', 'Solyc10g083390.2' => 'sly', 'Solyc11g069330.1' => 'sly', 'Sopen02g014550' => 'spe', 'Sopen02g036220' => 'spe', 'Sopen03g030740' => 'spe', 'Sopen05g009130' => 'spe', 'Sopen06g002310' => 'spe', 'Sopen09g008660' => 'spe', 'Sopen11g028050' => 'spe', 'Sp1g23320' => 'spa', 'Sp5g08940' => 'spa', 'Sp6g39530' => 'spa', 'Sp6g40970' => 'spa', 'Sp7g22790' => 'spa', 'Sp7g24690' => 'spa', 'TAR369G0317' => 'tar', 'TAR622G0377' => 'tar', 'TAR623G0466' => 'tar', 'TAR623G1426' => 'tar', 'TAR627G1143' => 'tar', 'THA.LOC104803138' => 'tha', 'THA.LOC104806503' => 'tha', 'THA.LOC104816178' => 'tha', 'THA.LOC104816335' => 'tha', 'THA.LOC104823307' => 'tha', 'THA.LOC104825540' => 'tha', 'Thecc.02G268500' => 'tca', 'Thecc.03G120900' => 'tca', 'Thecc.05G005900' => 'tca', 'Thecc.05G057900' => 'tca', 'Thecc.08G153000' => 'tca', 'Thecc.09G358600' => 'tca', 'Thhalv10009505m.g' => 'esa', 'Thhalv10011158m.g' => 'esa', 'Thhalv10015877m.g' => 'esa', 'Thhalv10022104m.g' => 'esa', 'Thhalv10026103m.g' => 'esa', 'Thhalv10027187m.g' => 'esa', 'TPR.G18266' => 'tpr', 'TPR.G18667' => 'tpr', 'TPR.G19038' => 'tpr', 'TPR.G20304' => 'tpr', 'TPR.G21206' => 'tpr', 'TPR.G21211' => 'tpr', 'TPR.G22168' => 'tpr', 'TPR.G5258' => 'tpr', 'TPR.G6246' => 'tpr', 'TPR.G632' => 'tpr', 'TWI09G1070' => 'twi', 'TWI36G0023' => 'twi', 'TWI39G0121' => 'twi', 'TWI53G0334' => 'twi', 'TWI53G1879' => 'twi', 'TWI74G0048' => 'twi', 'TWI74G0600' => 'twi', 'TWI75G0472' => 'twi', 'TWI77G0752' => 'twi', 'TWI79G0172' => 'twi', 'unitig_0.g1408' => 'ugi', 'unitig_22.g6662' => 'ugi', 'unitig_26.g9929' => 'ugi', 'unitig_27.g24876' => 'ugi', 'unitig_61.g26465' => 'ugi', 'unitig_699.g19374' => 'ugi', 'vmacro14442' => 'vma', 'vmacro16155' => 'vma', 'vmacro19254' => 'vma', 'VMungo0251G2052' => 'vmu', 'VMungo0540G0584' => 'vmu', 'VMungo0720G0157' => 'vmu', 'VMungo1080G0846' => 'vmu', 'VMungo1127G0801' => 'vmu', 'VMungo1215G0050' => 'vmu', 'VMungo1383G0750' => 'vmu', 'VMungo1383G2980' => 'vmu', 'Zm00001eb097260' => 'zma', 'Zm00001eb102990' => 'zma', 'Zm00001eb111920' => 'zma', 'Zm00001eb125040' => 'zma', 'Zm00001eb209720' => 'zma', 'Zm00001eb291950' => 'zma', 'Zm00001eb331500' => 'zma', 'Zm00001eb414610' => 'zma' ) $gf_id = 'HOM05D000860' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000860' ) $data_identifier = 'HOM05D000860' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 9, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 21, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 11, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 10, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414610' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1